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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
16
ATAC-seq
9
total RNA-seq
6
MeRIP-seq
5
STARR-seq
5
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
DNA binding
16
DNA accessibility
11
Transcription
1
DNA sequencing
Target of assay
21
control
3
nucleotide modification
1
broad histone mark
1
histone
1
histone modification
Date released
21
August, 2021
16
May, 2021
10
October, 2019
6
February, 2023
6
November, 2020
4
March, 2020
3
February, 2021
2
March, 2023
2
November, 2019
1
May, 2020
1
October, 2022
Available data
73
bam
fastq
14
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
3
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
68
Homo sapiens
Biosample type
939
tissue
277
primary cell
74
in vitro differentiated cells
72
cell line
6
stem cell
Organ
34
pancreas
27
epithelium
17
liver
7
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
1
mammary gland
Project
65
AMP
5
T1D
2
community
Genome assembly (visualization)
hg19
143
GRCh38
Lab
40
AMP-T2D consortium
19
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
32
inconsistent ontology term
assembly!
hg19
files.file_type!
fastq
lab.title!
Struan F.A. Grant, CHOP
lab.title!!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
72 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
STARR-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
2
16
6
3
2
2
1
HepG2
4
9
2
1
1
Panc1
7
EndoC-BH1
1
1
HEK293T
2
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