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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
9
total RNA-seq
5
STARR-seq
5
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
68
DNA binding
11
Transcription
1
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
59
control
9
transcription factor
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
19
August, 2021
7
November, 2018
5
February, 2023
4
March, 2020
3
February, 2021
3
January, 2019
3
October, 2019
2
March, 2023
1
December, 2018
1
May, 2020
1
October, 2022
Available data
64
bam
60
fastq
14
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
3
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
95
Homo sapiens
Biosample type
930
tissue
299
primary cell
98
cell line
96
in vitro differentiated cells
7
stem cell
Organ
71
liver
pancreas
21
epithelium
7
kidney
6
blood
6
bodily fluid
2
artery
2
blood vessel
2
heart
2
vasculature
1
mammary gland
Project
91
AMP
5
T1D
2
community
Genome assembly (visualization)
hg19
409
GRCh38
Lab
72
AMP-T2D consortium
19
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
month_released!
November, 2020
organ_slims!
pancreas
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
56
9
2
1
1
1
1
GM12878
6
EndoC_BH1
3
2
EndoC-BH1
1
1
HEK293T
2
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