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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 77ChIP-seq
  • 16ATAC-seq
  • 9total RNA-seq
  • 6MeRIP-seq
  • 5STARR-seq
  • 5pCHi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1Hi-C
  • 1MPRA
  • 1WGBS
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 77DNA binding
  • 16DNA accessibility
  • 11Transcription
  • 13D chromatin structure
  • 1DNA methylation
  • 1DNA sequencing
Target of assay
  • 70control
  • 9transcription factor
  • 4recombinant protein
  • 3RNA binding protein
  • 3nucleotide modification
  • 1broad histone mark
  • 1histone
  • 1histone modification
Date released
  • 49November, 2017
  • 21August, 2021
  • 16May, 2021
  • 10October, 2019
  • 7November, 2018
  • 6February, 2023
  • 6November, 2020
  • 4March, 2020
  • 3February, 2021
  • 3January, 2019
  • 2March, 2023
  • 2November, 2019
  • 1December, 2018
  • 1May, 2020
  • 1October, 2022
Available data
  • 73bam
  • 60fastq
  • 14tsv
  • 5bigWig
  • 4bed narrowPeak
  • 4bigBed narrowPeak
  • 3tagAlign
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1txt
  • 1vcf
Organism
  • 128Homo sapiens
Biosample type
  • 1022tissue
  • 460primary cell
  • 132cell line
  • 97in vitro differentiated cells
  • 7stem cell
Organ
  • 71liver
  • 34pancreas
  • 27epithelium
  • 7kidney
  • 6blood
  • 6bodily fluid
  • 2artery
  • 2blood vessel
  • 2heart
  • 2vasculature
  • 1mammary gland
Project
  • 125AMP
  • 5T1D
  • 2community
Genome assembly (visualization)
  • hg19
  • 464GRCh38
Lab
  • 100AMP-T2D consortium
  • 19Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 5Kyle Gaulton, UCSD
  • 2Anna Gloyn, Oxford
Audit category:
  • 32inconsistent ontology term
Audit category:
  • 1missing controlled_by
assembly!
  • hg19
BIOSAMPLE
ASSAY

132 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
STARR-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG256921111
EndoC_BH121663221
Panc17
GM128786
EndoC-BH111
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