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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
9
total RNA-seq
4
GRO-seq
3
pCHi-C
2
single cell RNA-seq
Assay category
52
DNA binding
11
Transcription
Target of assay
33
histone
33
histone modification
19
broad histone mark
14
narrow histone mark
12
transcription factor
7
control
5
RNA binding protein
Date released
42
May, 2021
14
August, 2017
4
February, 2023
4
January, 2018
2
December, 2019
2
March, 2020
1
August, 2018
1
August, 2021
Available data
bam
23
fastq
23
tagAlign
5
bigWig
4
tsv
1
bed narrowPeak
1
bedpe bed3+
Organism
70
Homo sapiens
Biosample type
763
tissue
425
primary cell
70
in vitro differentiated cells
58
cell line
7
stem cell
Organ
19
connective tissue
1
adipose tissue
1
embryo
Project
70
AMP
Genome assembly (visualization)
hg19
4
hg18
Lab
42
Kyle Gaulton, UCSD
28
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
2
audit script error
assembly!
hg19
files.file_type!
bam
vcf
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
total RNA-seq
GRO-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
37
5
1
adipocyte
14
1
cardiomyocytes (cardiac muscle cell)
1
2
immature adipocyte
2
Posterior foregut
1
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