Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79ChIP-seq
  • 9total RNA-seq
  • 4GRO-seq
  • 3pCHi-C
  • 2single cell RNA-seq
Assay category
  • 79DNA binding
  • 11Transcription
Target of assay
  • 35histone
  • 35histone modification
  • 32control
  • 20broad histone mark
  • 15narrow histone mark
  • 12transcription factor
  • 5RNA binding protein
Date released
  • 43May, 2021
  • 19August, 2017
  • 9August, 2021
  • 8February, 2018
  • 5December, 2017
  • 4February, 2023
  • 4January, 2018
  • 2December, 2019
  • 2March, 2020
  • 1August, 2018
Available data
  • 27bam
  • 23fastq
  • 23tagAlign
  • 5bigWig
  • 4tsv
  • 1bed narrowPeak
  • 1bedpe bed3+
Organism
  • 97Homo sapiens
Biosample type
  • 1022tissue
  • 460primary cell
  • 132cell line
  • 97in vitro differentiated cells
  • 7stem cell
Organ
  • 24connective tissue
  • 8embryo
  • 4epithelium
  • 1adipose tissue
  • 1liver
  • 1pancreas
Project
  • 97AMP
Genome assembly (visualization)
  • hg19
  • 265GRCh38
  • 4hg18
Lab
  • 55AMP-T2D consortium
  • 42Kyle Gaulton, UCSD
Audit category:
  • 7inconsistent ontology term
  • 2audit script error
Audit category:
  • 1missing controlled_by
assembly!
  • hg19
BIOSAMPLE
ASSAY

97 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell3851
adipocyte191
neural progenitor cell9
pancreatic endoderm51
cardiomyocytes (cardiac muscle cell)12
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego