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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
32
ChIP-seq
20
pCHi-C
9
DNase-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
Hi-C
Assay category
184
Transcription
181
DNA accessibility
48
DNA methylation
32
DNA binding
1
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
45
February, 2021
22
May, 2021
15
June, 2019
12
August, 2017
8
January, 2021
8
October, 2019
7
August, 2020
4
March, 2020
3
March, 2023
1
August, 2021
1
January, 2018
1
May, 2019
1
November, 2018
1
September, 2018
Available data
184
fastq
153
zippedFastqFolder
35
bam
22
tsv
18
bigWig
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
2
csv
1
hic
1
tagAlign
Organism
465
Homo sapiens
Biosample type
1012
tissue
460
primary cell
131
cell line
97
in vitro differentiated cells
7
stem cell
Organ
179
epithelium
161
pancreas
11
kidney
8
blood
8
bodily fluid
6
blood vessel
6
connective tissue
6
vasculature
5
vein
3
heart
2
musculature of body
1
bone element
1
bone marrow
1
eye
1
liver
Project
321
HPAP
119
AMP
24
T1D
2
community
1
ITG
Genome assembly (visualization)
hg19
539
GRCh38
1
hg18
Lab
321
Klaus Kaestner, Upenn
119
AMP-T2D consortium
24
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
13
inconsistent ontology term
assembly!
hg19
month_released!
October, 2017
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
467 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
DNase-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
GRO-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
6
pancreatic beta cell
16
11
16
6
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
+ See 37 more…
stem cell
SB Ad3.1
1
1
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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