Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
ChIP-seq
20
pCHi-C
9
DNase-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
Hi-C
Assay category
184
Transcription
181
DNA accessibility
48
DNA methylation
25
DNA binding
1
3D chromatin structure
Target of assay
25
control
histone
7
histone modification
4
broad histone mark
narrow histone mark
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
45
February, 2021
18
May, 2021
15
June, 2019
12
August, 2017
8
January, 2021
7
August, 2020
5
October, 2019
4
March, 2020
3
March, 2023
1
August, 2021
1
January, 2018
1
May, 2019
1
November, 2018
1
September, 2018
Available data
184
fastq
153
zippedFastqFolder
32
bam
22
tsv
18
bigWig
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
2
csv
1
hic
1
tagAlign
Organism
458
Homo sapiens
Biosample type
832
tissue
453
primary cell
131
cell line
62
in vitro differentiated cells
7
stem cell
Organ
176
epithelium
161
pancreas
11
kidney
8
blood
8
bodily fluid
6
connective tissue
3
blood vessel
3
heart
3
vasculature
2
musculature of body
2
vein
1
bone element
1
bone marrow
1
eye
1
liver
Project
321
HPAP
112
AMP
24
T1D
2
community
1
ITG
Genome assembly (visualization)
hg19
339
GRCh38
1
hg18
Lab
321
Klaus Kaestner, Upenn
112
AMP-T2D consortium
24
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
13
inconsistent ontology term
assembly!
hg19
target.investigated_as!
histone
narrow histone mark
BIOSAMPLE
ASSAY
460 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
DNase-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
GRO-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
6
pancreatic beta cell
16
11
16
6
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
+ See 37 more…
stem cell
SB Ad3.1
1
1
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
See all biosamples
Download