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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
ChIP-seq
260
single cell RNA-seq
254
ATAC-seq
228
total RNA-seq
87
RNA microarray
83
snATAC-seq
73
WGBS
40
pCHi-C
26
DNase-seq
4
MeRIP-seq
3
snDrop-seq
2
Hi-C
1
DNAme array
Assay category
488
Transcription
398
DNA binding
363
DNA accessibility
74
DNA methylation
2
3D chromatin structure
Target of assay
203
control
191
histone
191
histone modification
105
broad histone mark
86
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
229
August, 2021
160
May, 2022
150
February, 2023
138
February, 2021
105
August, 2017
87
October, 2019
80
May, 2020
76
November, 2017
59
September, 2020
47
September, 2023
40
May, 2024
29
June, 2019
29
October, 2018
24
May, 2021
23
February, 2020
22
May, 2019
21
March, 2020
19
April, 2020
16
January, 2021
15
April, 2019
14
May, 2023
12
December, 2017
12
July, 2019
10
November, 2018
10
October, 2017
7
August, 2020
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
1
August, 2022
1
January, 2019
1
March, 2023
1
September, 2018
Available data
290
bam
266
fastq
214
bed narrowPeak
173
tsv
156
txt
153
zippedFastqFolder
141
bigWig
132
tagAlign
75
bigBed narrowPeak
64
xls
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
15
bed bedMethyl
15
bigBed bedMethyl
8
csv
1
bedpe bed3+
1
hic
Organism
1456
Homo sapiens
Biosample type
1001
tissue
458
primary cell
131
cell line
97
in vitro differentiated cells
7
stem cell
Organ
253
pancreas
218
kidney
203
heart
182
epithelium
122
brain
94
liver
89
bone element
70
connective tissue
69
blood vessel
69
vasculature
64
adipose tissue
46
artery
27
eye
26
limb
musculature of body
20
lung
12
nerve
11
spleen
8
blood
8
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1018
AMP
321
HPAP
53
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
2342
GRCh38
hg19
Lab
804
AMP-T2D consortium
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
58
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
98
inconsistent ontology term
35
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
organ_slims!
mammary gland
musculature of body
BIOSAMPLE
ASSAY
1459 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
DNase-seq
MeRIP-seq
snDrop-seq
Hi-C
DNAme array
tissue
kidney
7
64
75
49
6
islet of Langerhans
40
26
32
7
4
4
1
liver
62
1
20
3
1
bone element
84
left cardiac atrium
40
18
+ See 86 more…
primary cell
Langerhans cell
85
48
pancreatic alpha cell
6
29
42
31
pancreatic beta cell
6
16
11
16
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
+ See 35 more…
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