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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
32
ChIP-seq
16
pCHi-C
2
DNase-seq
1
DNAme array
Assay category
182
Transcription
164
DNA accessibility
48
DNA methylation
32
DNA binding
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
134
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
45
February, 2021
22
May, 2021
12
August, 2017
8
January, 2021
8
June, 2019
8
October, 2019
1
August, 2021
1
May, 2019
1
November, 2018
1
September, 2018
Available data
183
fastq
153
zippedFastqFolder
35
bam
18
tsv
bigWig
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
2
csv
hic
1
tagAlign
Organism
442
Homo sapiens
Biosample type
883
tissue
442
primary cell
127
cell line
92
in vitro differentiated cells
6
stem cell
Organ
163
epithelium
151
pancreas
8
blood
8
bodily fluid
5
blood vessel
5
kidney
5
vasculature
5
vein
4
connective tissue
2
heart
2
musculature of body
1
bone element
1
bone marrow
1
eye
1
liver
Project
311
HPAP
107
AMP
24
T1D
Genome assembly (visualization)
hg19
16
GRCh38
Lab
311
Klaus Kaestner, Upenn
107
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
27
audit script error
12
inconsistent ontology term
assembly!
hg19
files.file_type!
bigWig
hic
month_released!
May, 2023
BIOSAMPLE
ASSAY
442 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
6
pancreatic beta cell
13
11
16
6
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
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