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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 116ATAC-seq
  • 95total RNA-seq
  • 87single cell RNA-seq
  • 56snATAC-seq
  • 47WGBS
  • 32ChIP-seq
  • 16pCHi-C
  • 9DNase-seq
  • 1DNAme array
  • 1Hi-C
Assay category
  • 182Transcription
  • 181DNA accessibility
  • 48DNA methylation
  • 32DNA binding
  • 13D chromatin structure
Target of assay
  • 25control
  • 7histone
  • 7histone modification
  • 4broad histone mark
  • 3narrow histone mark
Date released
  • 134May, 2022
  • 88February, 2023
  • 59September, 2020
  • 57May, 2020
  • 45February, 2021
  • 22May, 2021
  • 15June, 2019
  • 12August, 2017
  • 8January, 2021
  • 8October, 2019
  • 7August, 2020
  • 1August, 2021
  • 1March, 2023
  • 1May, 2019
  • 1November, 2018
  • 1September, 2018
Available data
  • 183fastq
  • 153zippedFastqFolder
  • 35bam
  • 18tsv
  • 17bigWig
  • 7bed bed3+
  • 7bed broadPeak
  • 7bed narrowPeak
  • 7bigBed broadPeak
  • 7bigBed narrowPeak
  • 2csv
  • 1hic
  • 1tagAlign
Organism
  • 460Homo sapiens
Biosample type
  • 1022tissue
  • 460primary cell
  • 132cell line
  • 97in vitro differentiated cells
  • 7stem cell
Organ
  • 179epithelium
  • 161pancreas
  • 11kidney
  • 8blood
  • 8bodily fluid
  • 6blood vessel
  • 6vasculature
  • 5connective tissue
  • 5vein
  • 3heart
  • 2musculature of body
  • 1bone element
  • 1bone marrow
  • 1eye
  • 1liver
Project
  • 321HPAP
  • 114AMP
  • 24T1D
  • 1ITG
Genome assembly (visualization)
  • hg19
  • 536GRCh38
Lab
  • 321Klaus Kaestner, Upenn
  • 114AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 1ITG
Audit category:
  • 27audit script error
  • 12inconsistent ontology term
assembly!
  • hg19
BIOSAMPLE
ASSAY

460 results

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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
DNase-seq
DNAme array
Hi-C
primary cell
Langerhans cell8548
pancreatic alpha cell2942316
pancreatic beta cell1611166
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell22121
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