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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
282
ChIP-seq
173
single cell RNA-seq
109
total RNA-seq
87
RNA microarray
39
ATAC-seq
27
WGBS
27
snATAC-seq
25
pCHi-C
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
1
DNase-seq
Assay category
282
DNA binding
282
Transcription
67
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
180
control
103
histone
103
histone modification
54
narrow histone mark
49
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
164
August, 2021
104
August, 2017
93
February, 2021
79
October, 2019
47
September, 2023
29
October, 2018
27
February, 2023
May, 2022
25
February, 2020
24
November, 2017
23
May, 2020
22
March, 2020
22
May, 2019
19
April, 2020
17
July, 2019
15
April, 2019
14
May, 2023
12
December, 2017
10
October, 2017
9
November, 2018
8
January, 2021
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
249
bam
bed narrowPeak
158
tsv
150
txt
133
tagAlign
125
bigWig
73
fastq
68
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
781
Homo sapiens
Biosample type
784
tissue
319
primary cell
127
cell line
96
in vitro differentiated cells
7
stem cell
Organ
142
kidney
123
heart
88
bone element
84
pancreas
73
liver
65
connective tissue
64
adipose tissue
60
brain
28
blood vessel
28
vasculature
26
eye
26
limb
20
lung
20
musculature of body
12
nerve
11
artery
7
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
689
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
hg19
976
GRCh38
Lab
605
AMP-T2D consortium
77
Katalin Susztak, Upenn
47
KPMP
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
files.file_type!
bed narrowPeak
month_released!
December, 2018
May, 2022
BIOSAMPLE
ASSAY
784 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
ATAC-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
MeRIP-seq
snDrop-seq
RRBS
DNase-seq
tissue
kidney
7
64
49
11
6
islet of Langerhans
40
26
26
7
4
1
4
bone element
84
liver
62
1
3
1
subcutaneous abdominal adipose tissue
35
3
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