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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
287
ChIP-seq
174
single cell RNA-seq
136
ATAC-seq
135
total RNA-seq
87
RNA microarray
27
snATAC-seq
25
pCHi-C
11
WGBS
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
1
DNase-seq
Assay category
309
Transcription
287
DNA binding
164
DNA accessibility
13
DNA methylation
5
3D chromatin structure
Target of assay
184
control
104
histone
104
histone modification
54
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
228
August, 2021
102
August, 2017
93
February, 2021
79
October, 2019
62
February, 2023
47
September, 2023
29
October, 2018
27
May, 2022
25
February, 2020
25
November, 2017
23
May, 2020
22
March, 2020
22
May, 2019
19
April, 2020
15
April, 2019
14
May, 2023
12
December, 2017
9
October, 2017
8
January, 2021
8
July, 2019
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
November, 2018
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
259
bam
207
bed narrowPeak
158
tsv
156
txt
133
tagAlign
bigWig
83
fastq
68
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
894
Homo sapiens
Biosample type
897
tissue
443
primary cell
127
cell line
92
in vitro differentiated cells
6
stem cell
Organ
206
kidney
152
heart
93
liver
88
bone element
86
pancreas
63
connective tissue
62
adipose tissue
62
blood vessel
62
vasculature
59
brain
46
artery
26
eye
25
limb
20
lung
20
musculature of body
12
nerve
9
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
802
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
147
GRCh38
hg19
Lab
628
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
files.file_type!
bedpe
bigWig
BIOSAMPLE
ASSAY
897 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
MeRIP-seq
snDrop-seq
RRBS
DNase-seq
tissue
kidney
7
64
75
49
6
islet of Langerhans
40
26
32
7
4
1
4
liver
62
1
20
1
3
bone element
84
coronary artery
2
35
1
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