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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ChIP-seq
174
single cell RNA-seq
138
ATAC-seq
135
total RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
309
Transcription
188
DNA binding
182
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
histone
190
histone modification
184
control
105
broad histone mark
85
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
228
August, 2021
93
February, 2021
62
February, 2023
58
October, 2019
47
September, 2023
40
August, 2017
29
October, 2018
27
May, 2022
25
February, 2020
23
May, 2020
22
March, 2020
22
May, 2019
19
April, 2020
17
July, 2019
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
12
November, 2017
9
November, 2018
8
January, 2021
5
May, 2024
4
December, 2018
4
July, 2018
4
November, 2020
4
October, 2017
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
207
bam
158
tsv
156
txt
120
bed narrowPeak
82
fastq
64
xls
52
tagAlign
39
bigWig
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
16
bigBed narrowPeak
6
csv
1
bedpe bed3+
Organism
829
Homo sapiens
Biosample type
832
tissue
453
primary cell
131
cell line
62
in vitro differentiated cells
7
stem cell
Organ
207
kidney
165
heart
88
bone element
84
pancreas
73
liver
63
blood vessel
63
vasculature
52
brain
46
artery
34
adipose tissue
34
connective tissue
25
limb
24
eye
20
lung
15
musculature of body
12
nerve
11
spleen
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
737
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1366
GRCh38
hg19
Lab
558
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
assembly!
hg19
files.file_type!
bedpe
target.investigated_as!
histone
BIOSAMPLE
ASSAY
832 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
64
75
49
6
islet of Langerhans
11
26
32
7
4
1
4
bone element
84
liver
42
1
20
3
1
coronary artery
2
35
1
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