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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
172
single cell RNA-seq
133
total RNA-seq
103
ATAC-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
17
DNase-seq
5
Hi-C
3
snDrop-seq
2
RRBS
Assay category
305
Transcription
238
DNA binding
147
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
123
control
109
histone
109
histone modification
57
narrow histone mark
52
broad histone mark
6
RNA binding protein
6
transcription factor
Date released
226
August, 2021
93
February, 2021
71
August, 2017
65
October, 2019
47
September, 2023
40
May, 2024
29
October, 2018
27
February, 2023
27
May, 2022
23
February, 2020
22
March, 2020
20
May, 2019
19
April, 2020
17
July, 2019
16
June, 2019
16
November, 2017
15
April, 2019
14
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
2
October, 2017
1
August, 2022
1
January, 2019
Available data
252
bam
172
bed narrowPeak
156
txt
154
tsv
tagAlign
125
bigWig
83
fastq
68
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
837
Homo sapiens
Biosample type
839
tissue
306
primary cell
123
cell line
74
in vitro differentiated cells
7
stem cell
Organ
207
kidney
200
heart
88
bone element
84
pancreas
63
blood vessel
63
vasculature
58
connective tissue
57
adipose tissue
50
liver
47
brain
artery
26
eye
26
limb
20
lung
19
musculature of body
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
744
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1681
GRCh38
hg19
Lab
534
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
assembly!
hg19
files.file_type!
tagAlign
zippedFastqFolder
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
artery
BIOSAMPLE
ASSAY
839 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
DNase-seq
Hi-C
snDrop-seq
RRBS
tissue
kidney
7
64
49
75
6
islet of Langerhans
37
32
26
7
4
1
bone element
84
left cardiac atrium
40
18
liver
19
1
20
3
1
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