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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
7
WGBS
6
total RNA-seq
2
ATAC-seq
Assay category
46
DNA binding
7
DNA methylation
6
Transcription
2
DNA accessibility
Target of assay
45
control
1
broad histone mark
1
histone
1
histone modification
Date released
12
December, 2017
11
August, 2017
9
November, 2018
9
October, 2018
6
May, 2022
4
December, 2018
4
October, 2017
4
September, 2017
1
January, 2019
1
March, 2019
Available data
238
bam
207
bed narrowPeak
156
txt
155
tsv
126
tagAlign
123
bigWig
68
bigBed narrowPeak
64
xls
61
fastq
17
bed broadPeak
16
bed bed3+
16
bigBed broadPeak
14
bed bedMethyl
14
bigBed bedMethyl
6
csv
1
bedpe bed3+
Organism
60
Homo sapiens
Biosample type
183
primary cell
61
tissue
60
cell line
22
in vitro differentiated cells
1
stem cell
Organ
27
pancreas
adipose tissue
22
connective tissue
20
liver
10
spleen
4
brain
Project
61
AMP
Genome assembly (visualization)
hg19
254
GRCh38
Lab
54
AMP-T2D consortium
6
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
missing controlled_by
assembly!
hg19
organ_slims!
adipose tissue
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
WGBS
total RNA-seq
ATAC-seq
tissue
liver
16
1
islet of Langerhans
5
6
1
body of pancreas
8
2
spleen
8
2
pancreas
3
2
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