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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
single cell RNA-seq
30
total RNA-seq
20
pCHi-C
3
snDrop-seq
2
RNA microarray
Assay category
133
Transcription
Date released
99
August, 2021
25
February, 2020
20
March, 2020
8
February, 2021
4
February, 2023
2
December, 2019
Available data
259
bam
207
bed narrowPeak
158
tsv
156
txt
133
tagAlign
125
bigWig
83
fastq
68
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
158
Homo sapiens
Biosample type
158
tissue
18
primary cell
14
cell line
4
in vitro differentiated cells
4
stem cell
Organ
98
heart
14
brain
10
blood vessel
10
kidney
10
vasculature
5
eye
4
artery
3
adipose tissue
3
connective tissue
3
epithelium
3
limb
3
musculature of body
3
pancreas
2
intestine
2
liver
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
158
AMP
Genome assembly (visualization)
hg19
917
GRCh38
Lab
157
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
assembly!
hg19
files.file_type!
bedpe
BIOSAMPLE
ASSAY
158 results
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single cell RNA-seq
total RNA-seq
pCHi-C
snDrop-seq
RNA microarray
tissue
heart left ventricle
18
1
right cardiac atrium
18
1
heart right ventricle
17
1
left cardiac atrium
18
aorta
4
1
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