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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
356
ChIP-seq
162
single cell RNA-seq
135
total RNA-seq
127
ATAC-seq
87
RNA microarray
27
WGBS
25
pCHi-C
17
DNase-seq
17
snATAC-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
356
DNA binding
297
Transcription
161
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
190
histone
190
histone modification
162
control
105
broad histone mark
85
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
228
August, 2021
104
August, 2017
93
February, 2021
79
October, 2019
76
November, 2017
62
February, 2023
47
September, 2023
40
May, 2024
29
October, 2018
27
May, 2022
25
February, 2020
23
May, 2020
22
March, 2020
May, 2019
17
July, 2019
16
June, 2019
15
April, 2019
May, 2023
12
December, 2017
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
237
bam
207
bed narrowPeak
158
tsv
156
txt
133
tagAlign
125
bigWig
83
fastq
68
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
965
Homo sapiens
Biosample type
967
tissue
459
primary cell
132
cell line
97
in vitro differentiated cells
7
stem cell
Organ
194
heart
193
kidney
119
brain
93
liver
91
pancreas
88
bone element
65
connective tissue
64
adipose tissue
52
blood vessel
52
vasculature
44
artery
26
eye
25
limb
20
musculature of body
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
891
AMP
47
KPMP
29
T1D
Genome assembly (visualization)
1755
GRCh38
hg19
Lab
691
AMP-T2D consortium
127
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
lab.title!
Xin Sun, UCSD
month_released!
May, 2019
May, 2023
BIOSAMPLE
ASSAY
967 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
WGBS
pCHi-C
DNase-seq
snATAC-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
61
49
64
6
islet of Langerhans
40
32
26
4
7
1
4
liver
62
1
20
3
1
bone element
84
left cardiac atrium
40
18
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