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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
338
ChIP-seq
125
ATAC-seq
118
single cell RNA-seq
102
total RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
17
DNase-seq
7
snATAC-seq
4
Hi-C
3
snDrop-seq
2
RRBS
Assay category
338
DNA binding
220
Transcription
149
DNA accessibility
29
DNA methylation
4
3D chromatin structure
Target of assay
182
control
155
histone
155
histone modification
85
broad histone mark
70
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
226
August, 2021
104
August, 2017
93
February, 2021
79
October, 2019
76
November, 2017
44
February, 2023
29
October, 2018
25
February, 2020
23
May, 2020
22
March, 2020
22
May, 2019
17
July, 2019
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
10
October, 2017
9
November, 2018
4
December, 2018
4
July, 2018
4
September, 2017
3
December, 2019
1
August, 2022
1
January, 2019
1
May, 2022
Available data
252
bam
167
bed narrowPeak
157
tsv
150
txt
133
tagAlign
85
bigWig
76
fastq
68
bigBed narrowPeak
64
xls
16
bed bed3+
16
bed bedMethyl
16
bed broadPeak
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
Organism
852
Homo sapiens
Biosample type
854
tissue
114
primary cell
99
cell line
55
in vitro differentiated cells
5
stem cell
Organ
160
heart
160
kidney
122
brain
88
bone element
73
liver
65
connective tissue
64
adipose tissue
63
blood vessel
63
vasculature
51
pancreas
46
artery
26
eye
26
limb
21
musculature of body
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
852
AMP
2
T1D
Genome assembly (visualization)
1816
GRCh38
hg19
Lab
713
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
854 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
WGBS
pCHi-C
DNase-seq
snATAC-seq
Hi-C
snDrop-seq
RRBS
tissue
kidney
7
75
17
49
6
bone element
84
islet of Langerhans
40
13
20
4
1
liver
62
1
3
1
coronary artery
2
35
1
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