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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
368
ChIP-seq
167
single cell RNA-seq
138
ATAC-seq
133
total RNA-seq
27
snATAC-seq
26
WGBS
24
pCHi-C
17
DNase-seq
4
MeRIP-seq
3
RNA microarray
1
Hi-C
Assay category
368
DNA binding
300
Transcription
182
DNA accessibility
26
DNA methylation
1
3D chromatin structure
Target of assay
184
histone
184
histone modification
180
control
101
broad histone mark
83
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
228
August, 2021
93
August, 2017
February, 2021
79
October, 2019
76
November, 2017
62
February, 2023
47
September, 2023
40
May, 2024
29
October, 2018
26
May, 2022
23
February, 2020
23
May, 2020
21
March, 2020
21
May, 2019
19
April, 2020
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
12
July, 2019
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
257
bam
207
bed narrowPeak
147
tsv
131
tagAlign
124
bigWig
83
fastq
68
bigBed narrowPeak
67
txt
64
xls
17
bed broadPeak
16
bed bed3+
16
bigBed broadPeak
15
bed bedMethyl
15
bigBed bedMethyl
1
bedpe bed3+
Organism
905
Homo sapiens
Biosample type
908
tissue
413
primary cell
129
cell line
97
in vitro differentiated cells
7
stem cell
Organ
200
heart
199
kidney
122
brain
92
liver
92
pancreas
65
connective tissue
64
adipose tissue
63
blood vessel
63
vasculature
46
artery
26
eye
26
limb
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
bone element
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
813
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1365
GRCh38
hg19
Lab
599
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
3
audit script error
3
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
month_released!
February, 2021
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
908 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
WGBS
pCHi-C
DNase-seq
MeRIP-seq
RNA microarray
Hi-C
tissue
kidney
7
59
75
49
6
islet of Langerhans
40
26
32
7
4
4
1
liver
62
20
3
1
left cardiac atrium
40
18
coronary artery
2
35
1
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