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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
368
ChIP-seq
172
single cell RNA-seq
120
total RNA-seq
92
ATAC-seq
87
RNA microarray
26
WGBS
25
snATAC-seq
24
pCHi-C
17
DNase-seq
4
MeRIP-seq
3
snDrop-seq
1
Hi-C
Assay category
368
DNA binding
292
Transcription
134
DNA accessibility
26
DNA methylation
1
3D chromatin structure
Target of assay
184
histone
184
histone modification
180
control
101
broad histone mark
83
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
228
August, 2021
93
August, 2017
93
February, 2021
79
October, 2019
76
November, 2017
February, 2023
47
September, 2023
40
May, 2024
29
October, 2018
26
May, 2022
23
February, 2020
23
May, 2020
21
March, 2020
21
May, 2019
19
April, 2020
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
12
July, 2019
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
257
bam
172
bed narrowPeak
152
txt
151
tsv
131
tagAlign
124
bigWig
83
fastq
68
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bigBed broadPeak
15
bed bedMethyl
15
bigBed bedMethyl
6
csv
1
bedpe bed3+
Organism
936
Homo sapiens
Biosample type
939
tissue
370
primary cell
125
cell line
93
in vitro differentiated cells
7
stem cell
Organ
207
kidney
164
heart
122
brain
93
liver
84
bone element
74
pancreas
65
connective tissue
64
adipose tissue
28
blood vessel
28
vasculature
26
limb
22
eye
musculature of body
20
lung
12
nerve
11
artery
11
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
862
AMP
47
KPMP
19
LungMap
11
T1D
Genome assembly (visualization)
1782
GRCh38
hg19
Lab
648
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
16
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
month_released!
February, 2023
organ_slims!
mammary gland
musculature of body
BIOSAMPLE
ASSAY
939 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
DNase-seq
MeRIP-seq
snDrop-seq
Hi-C
tissue
kidney
7
64
49
75
6
islet of Langerhans
40
27
15
5
4
4
1
liver
62
1
20
3
1
bone element
84
left cardiac atrium
40
18
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