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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
273
ChIP-seq
173
single cell RNA-seq
122
total RNA-seq
92
ATAC-seq
87
RNA microarray
27
WGBS
25
pCHi-C
25
snATAC-seq
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
295
Transcription
273
DNA binding
134
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
190
histone
190
histone modification
184
control
broad histone mark
85
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
228
August, 2021
93
February, 2021
79
October, 2019
64
August, 2017
February, 2023
47
September, 2023
36
November, 2017
29
October, 2018
27
May, 2022
25
February, 2020
23
May, 2020
22
March, 2020
22
May, 2019
20
May, 2024
19
April, 2020
17
July, 2019
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
5
October, 2017
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
223
bam
154
tsv
152
txt
116
bed narrowPeak
82
fastq
80
tagAlign
70
bigWig
64
xls
32
bigBed narrowPeak
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
852
Homo sapiens
Biosample type
855
tissue
368
primary cell
124
cell line
73
in vitro differentiated cells
7
stem cell
Organ
207
kidney
144
heart
84
bone element
81
liver
77
brain
70
pancreas
45
connective tissue
44
adipose tissue
28
blood vessel
28
vasculature
26
limb
22
eye
20
lung
17
musculature of body
12
nerve
11
artery
11
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
778
AMP
47
KPMP
19
LungMap
11
T1D
Genome assembly (visualization)
1582
GRCh38
hg19
Lab
584
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
16
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
assembly!
hg19
month_released!
February, 2023
organ_slims!
mammary gland
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
855 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
64
49
75
6
islet of Langerhans
36
27
15
4
5
1
4
bone element
84
liver
50
1
20
3
1
left cardiac atrium
20
18
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