Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
327
ChIP-seq
174
single cell RNA-seq
125
ATAC-seq
121
total RNA-seq
87
RNA microarray
27
snATAC-seq
21
WGBS
21
pCHi-C
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
327
DNA binding
295
Transcription
169
DNA accessibility
23
DNA methylation
5
3D chromatin structure
Target of assay
169
histone
169
histone modification
154
control
105
broad histone mark
64
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
228
August, 2021
104
August, 2017
93
February, 2021
October, 2019
76
November, 2017
62
February, 2023
47
September, 2023
40
May, 2024
29
October, 2018
27
May, 2022
25
February, 2020
23
May, 2020
22
March, 2020
22
May, 2019
19
April, 2020
17
July, 2019
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
10
October, 2017
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
223
bam
207
bed narrowPeak
158
tsv
156
txt
124
tagAlign
119
bigWig
74
fastq
68
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
csv
1
bedpe bed3+
Organism
931
Homo sapiens
Biosample type
934
tissue
451
primary cell
115
cell line
97
in vitro differentiated cells
7
stem cell
Organ
205
kidney
200
heart
114
brain
93
liver
88
bone element
85
pancreas
64
adipose tissue
64
connective tissue
58
blood vessel
58
vasculature
41
artery
21
musculature of body
20
lung
9
limb
6
spleen
5
eye
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
839
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1676
GRCh38
hg19
Lab
625
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
month_released!
November, 2018
October, 2019
BIOSAMPLE
ASSAY
934 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
5
64
75
49
6
liver
62
1
20
3
1
bone element
84
islet of Langerhans
19
13
18
7
1
4
left cardiac atrium
40
18
+ See 84 more…
See all biosamples
Download