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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
173
single cell RNA-seq
138
ATAC-seq
133
total RNA-seq
87
RNA microarray
27
snATAC-seq
26
WGBS
24
pCHi-C
17
DNase-seq
4
MeRIP-seq
3
snDrop-seq
1
Hi-C
Assay category
306
Transcription
267
DNA binding
182
DNA accessibility
26
DNA methylation
1
3D chromatin structure
Target of assay
184
histone
184
histone modification
180
control
broad histone mark
83
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
228
August, 2021
93
February, 2021
79
October, 2019
62
February, 2023
57
August, 2017
47
September, 2023
36
November, 2017
29
October, 2018
26
May, 2022
23
February, 2020
23
May, 2020
21
March, 2020
21
May, 2019
20
May, 2024
19
April, 2020
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
12
July, 2019
9
November, 2018
8
January, 2021
5
October, 2017
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
221
bam
156
txt
155
tsv
151
bed narrowPeak
82
fastq
78
tagAlign
69
bigWig
64
xls
32
bigBed narrowPeak
17
bed broadPeak
16
bed bed3+
16
bigBed broadPeak
15
bed bedMethyl
15
bigBed bedMethyl
6
csv
1
bedpe bed3+
Organism
897
Homo sapiens
Biosample type
900
tissue
454
primary cell
130
cell line
77
in vitro differentiated cells
7
stem cell
Organ
207
kidney
180
heart
88
bone element
88
pancreas
81
liver
77
brain
63
blood vessel
63
vasculature
46
artery
45
connective tissue
44
adipose tissue
26
eye
26
limb
20
lung
musculature of body
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
805
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1579
GRCh38
hg19
Lab
611
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
assembly!
hg19
organ_slims!
mammary gland
musculature of body
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
900 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
DNase-seq
MeRIP-seq
snDrop-seq
Hi-C
tissue
kidney
7
64
75
49
6
islet of Langerhans
36
26
32
7
4
4
1
bone element
84
liver
50
1
20
3
1
coronary artery
2
35
1
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