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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 378ChIP-seq
  • 174single cell RNA-seq
  • 138ATAC-seq
  • 135total RNA-seq
  • 87RNA microarray
  • 27WGBS
  • 27snATAC-seq
  • 25pCHi-C
  • 17DNase-seq
  • 5Hi-C
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2RRBS
Assay category
  • 378DNA binding
  • 309Transcription
  • 182DNA accessibility
  • 29DNA methylation
  • 53D chromatin structure
Target of assay
  • 190histone
  • 190histone modification
  • 184control
  • 105broad histone mark
  • 85narrow histone mark
  • 6RNA binding protein
  • 6transcription factor
  • 2nucleotide modification
Date released
  • 228August, 2021
  • 104August, 2017
  • 93February, 2021
  • 79October, 2019
  • 76November, 2017
  • 62February, 2023
  • 47September, 2023
  • 40May, 2024
  • 29October, 2018
  • 27May, 2022
  • 25February, 2020
  • 23May, 2020
  • 22March, 2020
  • 22May, 2019
  • 19April, 2020
  • 17July, 2019
  • 16June, 2019
  • 15April, 2019
  • 14May, 2023
  • 12December, 2017
  • 10October, 2017
  • 9November, 2018
  • 8January, 2021
  • 4December, 2018
  • 4July, 2018
  • 4November, 2020
  • 4September, 2017
  • 3December, 2019
  • 2March, 2019
  • 2May, 2021
  • 1August, 2022
  • 1January, 2019
Available data
  • 259bam
  • 207bed narrowPeak
  • 158tsv
  • 156txt
  • 133tagAlign
  • 125bigWig
  • 83fastq
  • 68bigBed narrowPeak
  • 64xls
  • 17bed broadPeak
  • 16bed bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 16bigBed broadPeak
  • 6csv
  • 1bedpe bed3+
Organism
  • 1019Homo sapiens
Biosample type
  • 1022tissue
  • 460primary cell
  • 132cell line
  • 97in vitro differentiated cells
  • 7stem cell
Organ
  • 207kidney
  • 200heart
  • 122brain
  • 93liver
  • 92pancreas
  • 88bone element
  • 65connective tissue
  • 64adipose tissue
  • 63blood vessel
  • 63vasculature
  • 46artery
  • 26eye
  • 26limb
  • 21musculature of body
  • 20lung
  • 12nerve
  • 11spleen
  • 5gonad
  • 5ovary
  • 4skeleton
  • 3epithelium
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 927AMP
  • 47KPMP
  • 29T1D
  • 19LungMap
Genome assembly (visualization)
  • 1859GRCh38
  • hg19
Lab
  • 713AMP-T2D consortium
  • 141Katalin Susztak, Upenn
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 34Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 87inconsistent ontology term
  • 8audit script error
Audit category:
  • 1missing controlled_by
assembly!
  • hg19
BIOSAMPLE
ASSAY

1022 results

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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney76475496
islet of Langerhans4026327414
liver6212031
bone element84
left cardiac atrium4018
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