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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ATAC-seq
55
total RNA-seq
47
WGBS
6
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
67
DNA accessibility
55
Transcription
47
DNA methylation
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
40
February, 2023
19
September, 2020
16
May, 2021
7
August, 2020
6
February, 2021
6
November, 2020
2
August, 2021
2
October, 2019
December, 2019
Available data
84
fastq
80
zippedFastqFolder
bam
16
bigWig
8
tsv
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
2
tagAlign
Organism
177
Homo sapiens
Biosample type
151
primary cell
25
cell line
2
tissue
Organ
234
pancreas
202
kidney
178
epithelium
176
heart
89
bone element
70
liver
65
connective tissue
45
blood vessel
45
vasculature
44
adipose tissue
39
artery
34
brain
26
eye
20
lung
19
musculature of body
8
blood
8
bodily fluid
8
limb
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
149
HPAP
29
AMP
Genome assembly (visualization)
hg19
10
GRCh38
Lab
149
Klaus Kaestner, Upenn
23
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
24
inconsistent ontology term
assembly!
hg19
files.file_type!
bam
month_released!
December, 2019
BIOSAMPLE
ASSAY
178 results
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ATAC-seq
total RNA-seq
WGBS
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
29
42
31
pancreatic beta cell
16
11
16
pancreatic acinar cell
4
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
EndoC_BH1
16
6
2
1
tissue
pigmented layer of retina
2
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