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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ATAC-seq
67
total RNA-seq
47
WGBS
14
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
91
DNA accessibility
67
Transcription
47
DNA methylation
14
DNA binding
1
3D chromatin structure
Target of assay
11
control
8
histone
8
histone modification
5
nucleotide modification
4
broad histone mark
4
narrow histone mark
Date released
80
May, 2022
56
February, 2023
19
September, 2020
17
May, 2021
14
August, 2017
10
November, 2020
8
January, 2021
7
August, 2020
6
February, 2021
4
August, 2021
4
July, 2018
3
March, 2020
3
October, 2019
1
August, 2022
1
February, 2020
1
March, 2019
Available data
108
fastq
80
zippedFastqFolder
bam
16
bigWig
9
tsv
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
233
Homo sapiens
Biosample type
149
primary cell
60
tissue
25
cell line
Organ
234
pancreas
205
kidney
179
epithelium
176
heart
89
bone element
70
liver
65
connective tissue
45
blood vessel
45
vasculature
44
adipose tissue
39
artery
34
brain
26
eye
20
lung
musculature of body
8
blood
8
bodily fluid
8
limb
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
149
HPAP
57
AMP
28
T1D
Genome assembly (visualization)
hg19
14
GRCh38
Lab
149
Klaus Kaestner, Upenn
45
AMP-T2D consortium
27
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
24
inconsistent ontology term
1
audit script error
assembly!
hg19
files.file_type!
bam
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
234 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
29
42
31
pancreatic beta cell
16
11
16
pancreatic acinar cell
4
tissue
islet of Langerhans
15
12
14
7
4
1
pancreas
1
4
1
body of pancreas
1
cell line
EndoC_BH1
16
6
2
1
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