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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 267ATAC-seq
  • 263single cell RNA-seq
  • 242total RNA-seq
  • 222ChIP-seq
  • 87RNA microarray
  • 83snATAC-seq
  • 57WGBS
  • 53pCHi-C
  • 10MeRIP-seq
  • 7Hi-C
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 509Transcription
  • 353DNA accessibility
  • 222DNA binding
  • 60DNA methylation
  • 73D chromatin structure
  • 1DNA sequencing
Target of assay
  • 175histone
  • 175histone modification
  • 90broad histone mark
  • 85narrow histone mark
  • 34control
  • 18transcription factor
  • 10RNA binding protein
  • 5nucleotide modification
Date released
  • 250August, 2021
  • 160February, 2023
  • 155May, 2022
  • 138February, 2021
  • 105August, 2017
  • 82May, 2021
  • 59September, 2020
  • 58May, 2020
  • 54October, 2019
  • 47September, 2023
  • 40May, 2024
  • 32March, 2020
  • 25February, 2020
  • 19April, 2020
  • 16January, 2021
  • 14May, 2023
  • 13November, 2017
  • 10November, 2020
  • 7August, 2020
  • 7July, 2019
  • 7October, 2017
  • 5December, 2019
  • 5January, 2018
  • 5March, 2023
  • 4July, 2018
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1March, 2019
  • 1November, 2018
  • 1October, 2022
  • 1September, 2018
Available data
  • bam
  • 350fastq
  • 219bed narrowPeak
  • 198tsv
  • 160tagAlign
  • 157txt
  • 153bigWig
  • 153zippedFastqFolder
  • 79bigBed narrowPeak
  • 64xls
  • 24bed broadPeak
  • 23bed bed3+
  • 23bigBed broadPeak
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 8csv
  • 2bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 1316Homo sapiens
Biosample type
  • 763tissue
  • 425primary cell
  • 70in vitro differentiated cells
  • 59cell line
  • 7stem cell
Organ
  • 234pancreas
  • 205kidney
  • 179epithelium
  • 176heart
  • 89bone element
  • 70liver
  • 65connective tissue
  • 45blood vessel
  • 45vasculature
  • 44adipose tissue
  • 39artery
  • 34brain
  • 26eye
  • 20lung
  • 19musculature of body
  • 8blood
  • 8bodily fluid
  • 8limb
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 874AMP
  • 321HPAP
  • 58T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • hg19
  • 168GRCh38
  • 5hg18
Lab
  • 600AMP-T2D consortium
  • 321Klaus Kaestner, Upenn
  • 141Katalin Susztak, Upenn
  • 99Kyle Gaulton, UCSD
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 21Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
Audit category:
  • 127inconsistent ontology term
  • 37audit script error
Audit category:
  • 1missing controlled_by
assembly!
  • hg19
files.file_type!
  • bam
BIOSAMPLE
ASSAY

1324 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
MeRIP-seq
Hi-C
GRO-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
DNase-seq
snDrop-seq
Capture-C
HiChIP
RRBS
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
...and 6 more
tissue
kidney7564496
islet of Langerhans2526357441
bone element84
left cardiac atrium1840
liver1202331
primary cell
Langerhans cell8548
pancreatic alpha cell294231
pancreatic beta cell161116
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell22121
in vitro differentiated cells
embryonic stem cell5371
adipocyte114
cardiomyocytes (cardiac muscle cell)21
immature adipocyte2
Posterior foregut1
cell line
EndoC_BH11663221
HepG295112
EndoC-BH1
HEK293T2
MCF-71
stem cell
SB Ad3.11
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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