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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
21
total RNA-seq
5
WGBS
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
Assay category
123
DNA binding
22
Transcription
5
DNA methylation
1
3D chromatin structure
1
DNA accessibility
Target of assay
91
control
23
histone
23
histone modification
14
broad histone mark
9
narrow histone mark
9
transcription factor
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
34
August, 2017
24
May, 2020
20
May, 2022
August, 2021
13
December, 2017
5
October, 2019
4
November, 2018
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
Available data
100
bam
75
fastq
43
tagAlign
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Organism
154
Homo sapiens
Biosample type
93
tissue
55
cell line
5
primary cell
1
in vitro differentiated cells
Organ
282
pancreas
204
epithelium
149
liver
112
brain
110
heart
93
connective tissue
89
bone element
89
kidney
64
adipose tissue
64
blood vessel
64
vasculature
46
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
154
AMP
Genome assembly (visualization)
hg19
530
GRCh38
Lab
134
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
1
missing controlled_by
assembly!
hg19
files.file_type!
bed bed3+
month_released!
August, 2021
BIOSAMPLE
ASSAY
154 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
tissue
liver
62
20
3
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
52
1
1
1
primary cell
endothelial cell of umbilical vein
5
in vitro differentiated cells
hepatocyte
1
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