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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
42
total RNA-seq
5
WGBS
4
pCHi-C
3
ATAC-seq
2
STARR-seq
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
209
DNA binding
43
Transcription
5
DNA methylation
4
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
119
control
90
histone
90
histone modification
57
broad histone mark
33
narrow histone mark
transcription factor
4
recombinant protein
3
RNA binding protein
Date released
119
November, 2017
34
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
13
December, 2017
13
February, 2020
10
October, 2017
8
October, 2019
3
March, 2020
3
May, 2019
2
July, 2019
1
December, 2018
1
February, 2021
1
November, 2018
Available data
176
bam
119
tagAlign
70
fastq
64
bigWig
62
bed narrowPeak
62
bigBed narrowPeak
26
tsv
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
269
Homo sapiens
Biosample type
205
tissue
62
cell line
1
in vitro differentiated cells
1
primary cell
Organ
286
pancreas
217
kidney
207
epithelium
197
heart
157
liver
112
brain
94
connective tissue
89
bone element
70
blood vessel
70
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
269
AMP
Genome assembly (visualization)
hg19
418
GRCh38
Lab
233
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
files.file_type!
bed bed3+
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
269 results
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ChIP-seq
total RNA-seq
WGBS
pCHi-C
ATAC-seq
STARR-seq
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
3
1
1
layer of hippocampus
22
caudate nucleus
14
1
substantia nigra
14
1
cingulate gyrus
12
+ See 23 more…
cell line
HepG2
47
9
1
1
2
1
1
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
See all biosamples
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