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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
4
Hi-C
2
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
12
DNA binding
4
3D chromatin structure
2
DNA methylation
1
Transcription
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
11
August, 2017
4
July, 2019
February, 2020
2
June, 2019
1
March, 2020
1
May, 2019
1
May, 2022
Available data
4
bam
2
tagAlign
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
1
tsv
Organism
20
Homo sapiens
Biosample type
18
tissue
2
primary cell
Organ
283
pancreas
225
kidney
213
epithelium
196
heart
164
liver
110
brain
91
connective tissue
89
bone element
67
blood vessel
67
vasculature
61
adipose tissue
46
artery
26
eye
22
limb
20
lung
20
musculature of body
14
blood
14
bodily fluid
11
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
20
AMP
Genome assembly (visualization)
hg19
52
GRCh38
Lab
20
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
files.file_type!
bed bedMethyl
files.file_type!!
bed bedMethyl
month_released!
February, 2020
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
9
2
1
gastrocnemius medialis
4
muscle of leg
1
psoas muscle
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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