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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
total RNA-seq
8
ChIP-seq
3
ATAC-seq
2
pCHi-C
Assay category
12
Transcription
8
DNA binding
3
DNA accessibility
Target of assay
6
control
2
histone
2
histone modification
2
narrow histone mark
Date released
12
February, 2020
4
November, 2017
3
May, 2019
2
March, 2020
2
October, 2017
1
July, 2019
1
October, 2019
Available data
88
bam
tagAlign
63
bigWig
bed narrowPeak
62
bigBed narrowPeak
14
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
4
fastq
Organism
25
Homo sapiens
Biosample type
25
tissue
Organ
195
pancreas
154
kidney
125
epithelium
125
heart
98
liver
89
bone element
73
connective tissue
58
adipose tissue
33
blood vessel
33
vasculature
27
eye
26
limb
25
brain
20
lung
20
musculature of body
14
blood
14
bodily fluid
12
nerve
11
artery
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
25
AMP
Genome assembly (visualization)
hg19
16
GRCh38
Lab
25
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
files.file_type!
bed narrowPeak
tagAlign
month_released!
May, 2022
BIOSAMPLE
ASSAY
25 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
tissue
cerebellum (Hemisphere)
1
1
1
Ammon's horn
1
1
layer of hippocampus
2
temporal lobe
2
amygdala
1
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