Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
26
ATAC-seq
6
WGBS
3
ChIP-seq
3
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
55
Transcription
28
DNA accessibility
6
DNA methylation
3
DNA binding
Target of assay
control
3
histone
3
histone modification
3
nucleotide modification
2
broad histone mark
1
narrow histone mark
Date released
May, 2022
40
February, 2023
19
September, 2020
16
May, 2021
7
August, 2020
6
February, 2021
5
October, 2019
3
November, 2020
2
August, 2021
1
December, 2019
Available data
69
fastq
16
bigWig
9
bam
9
tsv
6
bed bed3+
6
bed broadPeak
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
Organism
98
Homo sapiens
Biosample type
74
primary cell
22
cell line
3
tissue
Organ
149
pancreas
142
kidney
107
heart
99
epithelium
89
bone element
60
connective tissue
48
liver
41
adipose tissue
35
brain
26
eye
20
lung
16
musculature of body
15
blood vessel
15
vasculature
9
limb
8
blood
8
bodily fluid
5
gonad
5
ovary
4
artery
4
skeleton
3
spleen
3
vein
2
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
69
HPAP
30
AMP
Genome assembly (visualization)
hg19
156
GRCh38
Lab
69
Klaus Kaestner, Upenn
27
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
21
inconsistent ontology term
1
audit script error
assembly!
hg19
files.file_type!
bed narrowPeak
month_released!
May, 2022
target.investigated_as!
control
BIOSAMPLE
ASSAY
99 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
WGBS
ChIP-seq
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
42
7
6
pancreatic beta cell
11
3
endothelial cell of umbilical vein
3
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
EndoC_BH1
16
3
2
1
tissue
pigmented layer of retina
2
renal glomerulus
1
Download