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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
12
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
25
DNA binding
12
Transcription
3
DNA accessibility
Target of assay
25
control
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
Date released
12
February, 2020
12
November, 2017
8
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
1
July, 2019
Available data
36
bam
19
tagAlign
14
tsv
12
bigWig
10
bed bed3+
10
bed broadPeak
bed narrowPeak
10
bigBed broadPeak
10
bigBed narrowPeak
3
fastq
Organism
42
Homo sapiens
Biosample type
42
tissue
Organ
277
pancreas
204
epithelium
154
kidney
142
liver
127
heart
89
bone element
51
connective tissue
42
brain
35
adipose tissue
32
blood vessel
32
vasculature
25
eye
25
limb
20
lung
17
musculature of body
14
blood
14
bodily fluid
13
artery
12
nerve
11
spleen
7
embryo
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
hg19
14
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
files.file_type!
bed narrowPeak
target.investigated_as!
histone
target.investigated_as!!
histone
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
cerebellum (Hemisphere)
2
1
1
brain
3
caudate nucleus
2
1
layer of hippocampus
3
substantia nigra
2
1
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