Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
6
pCHi-C
3
ChIP-seq
1
ATAC-seq
Assay category
28
Transcription
11
DNA accessibility
3
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
1
control
Date released
21
October, 2019
19
April, 2020
4
February, 2023
2
March, 2020
1
February, 2020
1
June, 2019
Available data
7
tsv
1
bam
Organism
47
Homo sapiens
Biosample type
47
tissue
1
primary cell
Organ
286
pancreas
218
kidney
207
epithelium
202
heart
166
liver
112
brain
94
connective tissue
89
bone element
70
blood vessel
70
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
29
AMP
19
LungMap
Genome assembly (visualization)
hg19
2
GRCh38
Lab
29
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
assembly!
hg19
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
48 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
snATAC-seq
single cell RNA-seq
pCHi-C
ChIP-seq
ATAC-seq
tissue
islet of Langerhans
14
4
2
1
lung
10
9
1
retina
3
pigmented layer of retina
2
gastric (mucosa of stomach)
1
primary cell
retinal pigment epithelial cell
1
Download