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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
15
total RNA-seq
6
single cell RNA-seq
3
ATAC-seq
3
pCHi-C
2
WGBS
Assay category
66
DNA binding
21
Transcription
3
DNA accessibility
2
DNA methylation
Target of assay
45
control
21
histone
21
histone modification
11
broad histone mark
10
narrow histone mark
Date released
February, 2023
24
November, 2017
18
October, 2019
15
February, 2020
14
May, 2019
10
October, 2017
6
August, 2021
3
July, 2019
3
March, 2020
2
February, 2021
Available data
114
bam
77
tagAlign
65
bigWig
63
bed narrowPeak
bigBed narrowPeak
24
tsv
11
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
4
fastq
1
bed bedMethyl
1
bigBed bedMethyl
Organism
95
Homo sapiens
Biosample type
88
tissue
5
primary cell
2
cell line
Organ
230
pancreas
218
kidney
167
epithelium
166
heart
162
liver
90
connective tissue
85
bone element
65
adipose tissue
60
brain
35
blood vessel
35
vasculature
26
limb
23
eye
23
musculature of body
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
Genome assembly (visualization)
hg19
165
GRCh38
Lab
95
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
files.file_type!
bigBed narrowPeak
month_released!
February, 2023
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
pCHi-C
WGBS
tissue
aorta
2
4
1
2
brain
9
cingulate gyrus
7
layer of hippocampus
6
tibial artery
5
1
+ See 27 more…
primary cell
endothelial cell of umbilical vein
5
cell line
smooth muscle cell of the coronary artery
2
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