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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
49
total RNA-seq
13
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
70
DNA accessibility
57
Transcription
13
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
161
May, 2022
150
August, 2021
144
February, 2023
133
August, 2017
127
February, 2021
97
October, 2019
83
May, 2021
80
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
29
October, 2018
23
May, 2019
19
April, 2020
17
December, 2017
16
January, 2021
15
April, 2019
14
May, 2023
10
November, 2020
9
October, 2017
8
February, 2018
8
July, 2019
8
June, 2019
8
November, 2018
5
December, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
March, 2019
2
March, 2020
2
November, 2019
1
August, 2018
1
August, 2022
1
December, 2019
1
October, 2022
1
September, 2018
Available data
tsv
65
bed narrowPeak
64
xls
57
txt
9
bam
9
tagAlign
1
bedpe bed3+
bigWig
1
vcf
Organism
149
Homo sapiens
Biosample type
129
tissue
12
cell line
8
in vitro differentiated cells
1
primary cell
Organ
129
kidney
8
liver
3
epithelium
3
pancreas
1
adipose tissue
1
connective tissue
Project
150
AMP
Genome assembly (visualization)
74
GRCh38
hg19
Lab
127
Katalin Susztak, Upenn
12
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assembly!
hg19
files.file_type!
bigWig
tsv
month_released!
April, 2018
BIOSAMPLE
ASSAY
150 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
islet of Langerhans
1
subcutaneous adipose tissue
1
cell line
HepG2
4
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
8
primary cell
hepatocyte
1
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