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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
single cell RNA-seq
72
ChIP-seq
35
ATAC-seq
9
WGBS
4
Hi-C
4
pCHi-C
4
total RNA-seq
3
DNase-seq
2
RRBS
Assay category
98
Transcription
72
DNA binding
38
DNA accessibility
11
DNA methylation
4
3D chromatin structure
Target of assay
41
histone
41
histone modification
26
control
24
broad histone mark
17
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
13
July, 2019
11
August, 2017
10
April, 2019
7
June, 2019
7
May, 2019
4
February, 2020
4
March, 2020
2
February, 2021
1
May, 2022
Available data
100
tsv
78
bed narrowPeak
50
bigWig
33
bam
7
bed bedMethyl
7
bigBed bedMethyl
4
tagAlign
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
Organism
227
Homo sapiens
Biosample type
220
tissue
5
primary cell
2
cell line
Organ
225
kidney
205
heart
180
pancreas
129
epithelium
118
brain
91
liver
89
bone element
71
blood vessel
71
vasculature
67
connective tissue
48
artery
42
adipose tissue
27
eye
26
limb
23
musculature of body
20
lung
12
nerve
8
blood
8
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
227
AMP
Genome assembly (visualization)
319
GRCh38
hg19
Lab
187
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
assembly!
hg19
files.file_type!
fastq
organ_slims!
pericardium
BIOSAMPLE
ASSAY
227 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
total RNA-seq
DNase-seq
RRBS
tissue
left cardiac atrium
18
40
coronary artery
2
35
1
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
right cardiac atrium
18
1
1
1
+ See 14 more…
primary cell
cardiac fibroblast
2
1
skeletal muscle cell
1
skeletal muscle satellite cell
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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