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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 413ChIP-seq
  • 258ATAC-seq
  • 227single cell RNA-seq
  • 150total RNA-seq
  • 87RNA microarray
  • 58WGBS
  • 56snATAC-seq
  • 52pCHi-C
  • 26DNase-seq
  • 10MeRIP-seq
  • 6Hi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 413DNA binding
  • 381Transcription
  • 340DNA accessibility
  • 61DNA methylation
  • 63D chromatin structure
  • 1DNA sequencing
Target of assay
  • 231histone
  • 231histone modification
  • 169control
  • 129broad histone mark
  • 102narrow histone mark
  • 18transcription factor
  • 11RNA binding protein
  • 5nucleotide modification
Date released
  • 259August, 2021
  • 155May, 2022
  • 103August, 2017
  • 97October, 2019
  • 96February, 2021
  • 84February, 2023
  • 83May, 2021
  • 81May, 2020
  • 76November, 2017
  • 47September, 2023
  • 40May, 2024
  • 32March, 2020
  • 31June, 2019
  • 25February, 2020
  • 23May, 2019
  • 19April, 2020
  • 18September, 2020
  • 17July, 2019
  • 16January, 2021
  • 15April, 2019
  • 14May, 2023
  • 10November, 2020
  • 6October, 2017
  • 5December, 2019
  • 5March, 2023
  • 4July, 2018
  • 2November, 2019
  • 2October, 2018
  • 1August, 2022
  • 1March, 2019
  • 1October, 2022
Available data
  • 394bam
  • fastq
  • 219bed narrowPeak
  • 198tsv
  • 160tagAlign
  • 157txt
  • 153bigWig
  • 153zippedFastqFolder
  • 79bigBed narrowPeak
  • 64xls
  • 24bed broadPeak
  • 23bed bed3+
  • 23bigBed broadPeak
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 8csv
  • 2bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 1360Homo sapiens
Biosample type
  • 939tissue
  • 277primary cell
  • 74in vitro differentiated cells
  • 72cell line
  • 6stem cell
Organ
  • 225kidney
  • 205heart
  • 180pancreas
  • 129epithelium
  • 118brain
  • 91liver
  • 89bone element
  • 71blood vessel
  • 71vasculature
  • 67connective tissue
  • 48artery
  • 42adipose tissue
  • 27eye
  • 26limb
  • 23musculature of body
  • 20lung
  • 12nerve
  • 8blood
  • 8bodily fluid
  • 5gonad
  • 5ovary
  • 5vein
  • 4skeleton
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1087AMP
  • 152HPAP
  • 58T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • hg19
  • 2176GRCh38
Lab
  • 813AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 141Katalin Susztak, Upenn
  • 99Kyle Gaulton, UCSD
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 21Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
Audit category:
  • 137inconsistent ontology term
  • 10audit script error
assembly!
  • hg19
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

1368 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
DNase-seq
MeRIP-seq
Hi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
Capture-C
HiChIP
RRBS
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
...and 5 more
tissue
kidney77564496
islet of Langerhans3525267441
bone element84
liver4612021
left cardiac atrium4018
primary cell
Langerhans cell5121
pancreatic alpha cell2225
pancreatic beta cell1316
naive thymus-derived CD4-positive, alpha-beta T cell22211
CD4-positive, alpha-beta memory T cell22
in vitro differentiated cells
embryonic stem cell3751
adipocyte141
neural progenitor cell9
cardiomyocytes (cardiac muscle cell)21
immature adipocyte2
cell line
EndoC_BH121663221
HepG24912
Panc17
EndoC-BH1
HEK293T2
stem cell
SB Ad3.111
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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