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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
30
total RNA-seq
5
WGBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
79
DNA binding
31
Transcription
5
DNA methylation
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
67
control
9
transcription factor
4
recombinant protein
3
RNA binding protein
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
49
November, 2017
20
May, 2022
16
August, 2021
14
August, 2017
13
December, 2017
4
November, 2018
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
1
May, 2020
Available data
96
bam
75
fastq
tagAlign
12
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
122
Homo sapiens
Biosample type
71
cell line
50
tissue
1
in vitro differentiated cells
Organ
225
kidney
203
heart
203
pancreas
131
epithelium
122
liver
89
bone element
74
connective tissue
69
blood vessel
69
vasculature
58
adipose tissue
47
brain
46
artery
27
eye
limb
21
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
122
AMP
Genome assembly (visualization)
hg19
500
GRCh38
Lab
86
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assembly!
hg19
files.file_type!
tagAlign
zippedFastqFolder
organ_slims!
limb
BIOSAMPLE
ASSAY
122 results
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ChIP-seq
total RNA-seq
WGBS
STARR-seq
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
56
9
1
2
1
1
1
tissue
liver
19
20
3
1
1
right lobe of liver
3
1
1
1
in vitro differentiated cells
hepatocyte
1
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