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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
35
ATAC-seq
21
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
2
WGBS
2
pCHi-C
1
DNase-seq
Assay category
36
DNA accessibility
21
DNA binding
13
Transcription
2
DNA methylation
Target of assay
18
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
84
February, 2021
39
February, 2023
11
May, 2019
10
October, 2019
6
August, 2021
3
February, 2020
2
July, 2019
1
June, 2019
1
March, 2020
1
May, 2021
Available data
88
txt
36
bed narrowPeak
26
bam
10
tsv
2
bigWig
tagAlign
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
158
Homo sapiens
Biosample type
151
tissue
7
primary cell
Organ
264
pancreas
225
kidney
203
heart
192
epithelium
122
liver
89
bone element
74
connective tissue
69
blood vessel
69
vasculature
58
adipose tissue
47
brain
46
artery
27
eye
26
limb
21
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
157
AMP
1
T1D
Genome assembly (visualization)
253
GRCh38
hg19
Lab
157
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assembly!
hg19
files.file_type!
tagAlign
month_released!
September, 2020
BIOSAMPLE
ASSAY
158 results
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RNA microarray
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
DNase-seq
tissue
bone element
84
coronary artery
35
2
1
aorta
2
4
2
1
tibial artery
5
1
ascending aorta
3
1
+ See 6 more…
primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
megakaryocyte
1
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