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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
4
Hi-C
2
RRBS
2
total RNA-seq
1
GRO-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
17
DNA binding
4
3D chromatin structure
3
DNA methylation
3
Transcription
Target of assay
10
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
9
August, 2017
5
July, 2019
4
December, 2017
3
February, 2018
2
February, 2020
2
June, 2019
1
January, 2018
1
March, 2020
1
May, 2019
1
May, 2022
Available data
11
bam
8
fastq
3
tsv
2
bigWig
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
29
Homo sapiens
Biosample type
19
tissue
8
in vitro differentiated cells
2
primary cell
Organ
283
pancreas
225
kidney
211
epithelium
203
heart
122
liver
89
bone element
74
connective tissue
69
blood vessel
69
vasculature
58
adipose tissue
47
brain
46
artery
27
eye
26
limb
21
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
29
AMP
Genome assembly (visualization)
hg19
82
GRCh38
1
hg18
Lab
29
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
GRO-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
7
2
1
gastrocnemius medialis
4
1
muscle of leg
1
1
left ventricle myocardium
1
psoas muscle
1
in vitro differentiated cells
pancreatic endoderm
5
1
Hepatic endoderm
2
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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