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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
73
total RNA-seq
51
WGBS
50
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
94
DNA accessibility
73
Transcription
51
DNA methylation
50
DNA binding
1
3D chromatin structure
Target of assay
48
control
7
histone
7
histone modification
5
broad histone mark
5
nucleotide modification
2
narrow histone mark
Date released
86
May, 2022
56
February, 2023
25
August, 2017
19
September, 2020
17
May, 2021
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
7
August, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2018
4
September, 2017
3
March, 2020
2
June, 2019
2
March, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
108
fastq
80
zippedFastqFolder
54
bam
16
bigWig
9
tsv
6
txt
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
282
Homo sapiens
Biosample type
161
primary cell
88
tissue
34
cell line
Organ
283
pancreas
225
kidney
211
epithelium
203
heart
122
liver
89
bone element
74
connective tissue
69
blood vessel
69
vasculature
58
adipose tissue
47
brain
46
artery
27
eye
26
limb
21
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
HPAP
106
AMP
28
T1D
Genome assembly (visualization)
hg19
627
GRCh38
Lab
149
Klaus Kaestner, Upenn
87
AMP-T2D consortium
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
26
inconsistent ontology term
1
audit script error
assembly!
hg19
files.file_type!
tagAlign
target.investigated_as!
other context
BIOSAMPLE
ASSAY
283 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
29
42
31
6
pancreatic beta cell
16
11
16
6
pancreatic acinar cell
4
tissue
islet of Langerhans
16
18
16
7
4
1
body of pancreas
1
2
9
2
pancreas
1
2
2
4
1
endocrine pancreas
2
cell line
EndoC_BH1
16
2
6
2
1
Panc1
7
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