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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
20
total RNA-seq
5
WGBS
2
STARR-seq
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
123
DNA binding
21
Transcription
5
DNA methylation
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
94
control
20
histone
20
histone modification
12
broad histone mark
9
transcription factor
8
narrow histone mark
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
34
August, 2017
23
May, 2020
20
May, 2022
13
December, 2017
8
August, 2021
4
November, 2018
1
December, 2018
1
February, 2021
1
July, 2019
Available data
96
bam
75
fastq
44
tagAlign
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
154
Homo sapiens
Biosample type
91
tissue
61
cell line
1
in vitro differentiated cells
1
primary cell
Organ
275
pancreas
213
kidney
204
epithelium
154
liver
108
brain
107
heart
91
connective tissue
89
bone element
62
adipose tissue
61
blood vessel
61
vasculature
44
artery
23
limb
22
eye
20
musculature of body
19
lung
14
blood
14
bodily fluid
11
nerve
spleen
8
embryo
5
vein
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pituitary gland
1
skin of body
1
thymus
Project
154
AMP
Genome assembly (visualization)
hg19
369
GRCh38
Lab
127
AMP-T2D consortium
20
Karen Mohlke, UNC
7
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assembly!
hg19
files.file_type!
tsv
month_released!
July, 2018
organ_slims!
spleen
BIOSAMPLE
ASSAY
154 results
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ChIP-seq
total RNA-seq
WGBS
STARR-seq
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
3
1
right lobe of liver
3
1
1
cell line
HepG2
56
1
2
1
1
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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