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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
18
ChIP-seq
4
Hi-C
4
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
18
DNA binding
4
3D chromatin structure
4
Transcription
1
DNA methylation
Target of assay
17
control
1
histone
1
histone modification
1
narrow histone mark
Date released
84
February, 2021
17
October, 2019
5
July, 2019
4
February, 2023
1
May, 2019
1
May, 2021
Available data
88
txt
18
bam
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
112
Homo sapiens
Biosample type
111
tissue
1
primary cell
Organ
279
pancreas
213
kidney
204
epithelium
154
liver
108
brain
107
heart
91
connective tissue
89
bone element
62
adipose tissue
61
blood vessel
61
vasculature
44
artery
23
limb
22
eye
20
musculature of body
19
lung
14
blood
14
bodily fluid
11
nerve
10
spleen
8
embryo
5
vein
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pituitary gland
1
skin of body
1
thymus
Project
111
AMP
1
T1D
Genome assembly (visualization)
hg19
94
GRCh38
Lab
111
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assembly!
hg19
files.file_type!
tsv
BIOSAMPLE
ASSAY
112 results
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RNA microarray
ChIP-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
bone element
84
tibial nerve
11
tibial artery
5
gastrocnemius medialis
4
muscle of leg
1
1
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primary cell
megakaryocyte
1
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