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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
64
ATAC-seq
59
total RNA-seq
14
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
RNA microarray
Assay category
165
Transcription
70
DNA accessibility
14
DNA binding
1
3D chromatin structure
Target of assay
12
control
2
broad histone mark
2
histone
2
histone modification
Date released
258
August, 2021
161
May, 2022
February, 2023
141
February, 2021
135
August, 2017
125
November, 2017
97
October, 2019
83
May, 2021
81
May, 2020
59
September, 2020
47
September, 2023
40
May, 2024
32
March, 2020
31
June, 2019
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
17
July, 2019
17
November, 2018
16
January, 2021
15
April, 2019
14
May, 2023
10
November, 2020
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
108
tsv
65
bed narrowPeak
64
xls
57
txt
9
bam
9
tagAlign
1
bedpe bed3+
1
bigWig
vcf
Organism
257
Homo sapiens
Biosample type
228
tissue
20
cell line
9
in vitro differentiated cells
1
primary cell
Organ
129
kidney
92
heart
16
liver
6
blood vessel
6
vasculature
4
pancreas
3
epithelium
2
artery
1
adipose tissue
1
connective tissue
Project
258
AMP
Genome assembly (visualization)
105
GRCh38
hg19
Lab
127
Katalin Susztak, Upenn
111
AMP-T2D consortium
20
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assembly!
hg19
files.file_type!
vcf
month_released!
February, 2023
October, 2018
BIOSAMPLE
ASSAY
258 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
4
2
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
9
primary cell
hepatocyte
1
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