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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
6
WGBS
3
pCHi-C
2
total RNA-seq
1
RNA microarray
Assay category
58
DNA binding
6
DNA methylation
2
Transcription
Target of assay
34
histone
34
histone modification
24
control
20
broad histone mark
14
narrow histone mark
Date released
42
August, 2017
18
October, 2018
4
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
Available data
23
fastq
21
bam
7
tagAlign
4
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
bigWig
1
bedpe bed3+
Organism
69
Homo sapiens
Biosample type
69
tissue
1
in vitro differentiated cells
Organ
225
kidney
208
pancreas
205
heart
166
liver
133
epithelium
122
brain
95
connective tissue
89
bone element
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
70
AMP
Genome assembly (visualization)
hg19
424
GRCh38
Lab
70
AMP-T2D consortium
assembly!
hg19
files.file_type!
zippedFastqFolder
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
WGBS
pCHi-C
total RNA-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
3
1
islet of Langerhans
4
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in vitro differentiated cells
white fat cell
1
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