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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 344ChIP-seq
  • 23DNase-seq
  • 18WGBS
  • 6total RNA-seq
  • 3ATAC-seq
Assay category
  • 344DNA binding
  • 26DNA accessibility
  • 18DNA methylation
  • 6Transcription
Target of assay
  • 277control
  • 58histone
  • 58histone modification
  • 40broad histone mark
  • 18narrow histone mark
  • 9transcription factor
  • 4RNA binding protein
  • 4recombinant protein
Date released
  • 112November, 2017
  • 43October, 2019
  • 31June, 2019
  • 30August, 2017
  • 29October, 2018
  • 23May, 2019
  • 23May, 2020
  • 17December, 2017
  • 16November, 2018
  • 15April, 2019
  • 10July, 2019
  • 9August, 2021
  • 8February, 2018
  • 6May, 2022
  • 4December, 2018
  • 4January, 2019
  • 4September, 2017
  • 3February, 2021
  • 3October, 2017
  • 2November, 2019
  • 1March, 2019
  • 1May, 2021
Available data
  • 394bam
  • 350fastq
  • 219bed narrowPeak
  • 198tsv
  • 160tagAlign
  • 157txt
  • 153bigWig
  • 153zippedFastqFolder
  • 79bigBed narrowPeak
  • 64xls
  • 24bed broadPeak
  • 23bed bed3+
  • 23bigBed broadPeak
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 8csv
  • 2bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 393Homo sapiens
Biosample type
  • 259tissue
  • 73cell line
  • 35primary cell
  • 27in vitro differentiated cells
Organ
  • 96liver
  • 88brain
  • 54pancreas
  • 34epithelium
  • 30connective tissue
  • 29heart
  • 26blood vessel
  • 26vasculature
  • 21adipose tissue
  • 20kidney
  • 18limb
  • 11nerve
  • 10spleen
  • 9artery
  • 7embryo
  • 6blood
  • 6bodily fluid
  • 5vein
  • 4musculature of body
  • 1eye
Project
  • 394AMP
Genome assembly (visualization)
  • hg19
  • 2959GRCh38
Lab
  • 387AMP-T2D consortium
  • 6Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 12inconsistent ontology term
Audit category:
  • 2missing controlled_by
assembly!
  • hg19
BIOSAMPLE
ASSAY

394 results

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Clear Filters
ChIP-seq
DNase-seq
WGBS
total RNA-seq
ATAC-seq
tissue
liver39
layer of hippocampus19
caudate nucleus131
body of pancreas922
islet of Langerhans561
cell line
HepG2511
Panc17
GM128786
EndoC_BH12
smooth muscle cell of the coronary artery2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
endothelial cell of umbilical vein5
cardiac fibroblast21
epithelial cell of proximal tubule2
in vitro differentiated cells
neural progenitor cell8
adipocyte5
pancreatic endoderm5
Hepatic endoderm2
definitive endodermal cell1
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