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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ATAC-seq
56
ChIP-seq
23
DNase-seq
Assay category
122
DNA accessibility
56
DNA binding
Target of assay
47
histone
47
histone modification
27
broad histone mark
20
narrow histone mark
9
transcription factor
6
RNA binding protein
3
recombinant protein
Date released
64
August, 2021
40
May, 2024
35
February, 2023
23
June, 2019
14
November, 2017
2
November, 2018
Available data
349
bam
318
fastq
219
bed narrowPeak
198
tsv
157
txt
153
zippedFastqFolder
151
bigWig
tagAlign
79
bigBed narrowPeak
64
xls
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
15
bed bedMethyl
15
bigBed bedMethyl
8
csv
2
bedpe bed3+
1
hic
1
vcf
Organism
178
Homo sapiens
Biosample type
167
tissue
7
primary cell
4
cell line
Organ
78
heart
71
kidney
36
blood vessel
36
vasculature
35
artery
22
brain
6
epithelium
4
liver
2
pancreas
1
connective tissue
Project
178
AMP
Genome assembly (visualization)
1221
GRCh38
hg19
Lab
74
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
assembly!
hg19
files.file_type!
tagAlign
month_released!
April, 2019
August, 2017
BIOSAMPLE
ASSAY
178 results
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ATAC-seq
ChIP-seq
DNase-seq
tissue
kidney
64
left cardiac atrium
40
coronary artery
35
layer of hippocampus
6
middle frontal area 46
5
+ See 15 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
cell line
HepG2
4
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