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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
84
RNA microarray
64
ATAC-seq
55
total RNA-seq
13
single cell RNA-seq
1
MPRA
Assay category
97
DNA binding
68
Transcription
64
DNA accessibility
Target of assay
88
histone
88
histone modification
57
broad histone mark
31
narrow histone mark
9
transcription factor
6
RNA binding protein
3
recombinant protein
Date released
122
August, 2021
89
February, 2021
54
November, 2017
40
May, 2024
February, 2023
6
May, 2022
2
November, 2018
1
October, 2022
Available data
394
bam
274
fastq
184
bed narrowPeak
182
tsv
160
tagAlign
153
bigWig
153
txt
153
zippedFastqFolder
79
bigBed narrowPeak
64
xls
24
bed broadPeak
bed bed3+
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
2
bedpe bed3+
1
hic
1
vcf
Organism
313
Homo sapiens
Biosample type
308
tissue
5
cell line
1
in vitro differentiated cells
Organ
126
kidney
84
bone element
52
brain
40
heart
6
pancreas
4
liver
Project
314
AMP
Genome assembly (visualization)
1362
GRCh38
hg19
Lab
147
AMP-T2D consortium
121
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
5
audit script error
assembly!
hg19
files.file_type!
bed bed3+
month_released!
February, 2023
BIOSAMPLE
ASSAY
314 results
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ChIP-seq
RNA microarray
ATAC-seq
total RNA-seq
single cell RNA-seq
MPRA
tissue
kidney
64
49
13
bone element
84
left cardiac atrium
40
layer of hippocampus
16
caudate nucleus
11
+ See 5 more…
cell line
HepG2
4
MIN6
1
in vitro differentiated cells
neural progenitor cell
1
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