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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
21
DNase-seq
Assay category
40
DNA binding
21
DNA accessibility
Target of assay
52
histone
52
histone modification
36
broad histone mark
narrow histone mark
4
transcription factor
3
recombinant protein
1
RNA binding protein
Date released
38
November, 2017
21
June, 2019
2
November, 2018
Available data
300
bam
241
fastq
189
tsv
186
bed narrowPeak
151
txt
125
tagAlign
106
bigWig
73
zippedFastqFolder
64
xls
61
bigBed narrowPeak
21
bed bed3+
21
bed broadPeak
21
bigBed broadPeak
13
bed bedMethyl
13
bigBed bedMethyl
8
csv
1
bedpe bed3+
1
hic
1
vcf
Organism
61
Homo sapiens
Biosample type
50
tissue
7
primary cell
4
cell line
Organ
46
brain
7
kidney
6
epithelium
4
liver
3
heart
pancreas
1
blood vessel
1
connective tissue
1
vasculature
Project
61
AMP
Genome assembly (visualization)
717
GRCh38
hg19
Lab
61
AMP-T2D consortium
assembly!
hg19
month_released!
May, 2019
organ_slims!
pancreas
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
DNase-seq
tissue
layer of hippocampus
10
caudate nucleus
8
1
substantia nigra
8
middle frontal area 46
6
cingulate gyrus
4
+ See 12 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
cell line
HepG2
4
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